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ASM836523v1

Organism name:
Enterobacter kobei (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: EB_P8_L5_01.19
BioSample:
SAMN12648938
BioProject:
PRJNA562727
Submitter:
Public Health England
Date:
2019/09/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_008365235.1 (latest)
RefSeq assembly accession:
GCF_008365235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
miniasm v. 0.2 r168 dirty; Racon correction (3 iterations) v. 1.3.1; Illumina correction with Racon (10 iterations) v. 1.3.1
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Oxford Nanopore MiniION; Illumina HiSeq

IDs: 4557591 [UID] 13701168 [GenBank] 13761798 [RefSeq]

See Genome Information for Enterobacter kobei

There are 619 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/20/2023 03:06:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,151
CDSs (total)::5,035
Genes (coding)::4,777
CDSs (with protein)::4,777
Genes (RNA)::116
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::84
ncRNAs::10
Pseudo Genes (total)::258
CDSs (without protein)::258
Pseudo Genes (ambiguous residues)::0 of 258
Pseudo Genes (frameshifted)::141 of 258
Pseudo Genes (incomplete)::126 of 258
Pseudo Genes (internal stop)::25 of 258
Pseudo Genes (multiple problems)::28 of 258
Pseudo Genes (short protein)::1 of 258
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,197,300
Total ungapped length5,197,300
Total number of chromosomes and plasmids7

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_008365245.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP043511.1=NZ_CP043511.1
Plasmid unnamed1CP043512.1=NZ_CP043512.1
Plasmid unnamed2CP043513.1=NZ_CP043513.1
Plasmid pIMPIncN3_57kbCP043516.1=NZ_CP043516.1
Plasmid unnamed3CP043514.1=NZ_CP043514.1
Plasmid unnamed4CP043515.1=NZ_CP043515.1
Plasmid unnamed5CP043517.1=NZ_CP043517.1

Assembly statistics

MoleculeTotal
Length
All5,197,300
Chromosome 4,801,031
Plasmid unnamed1142,503
Plasmid unnamed245,011
Plasmid pIMPIncN3_57kb56,515
Plasmid unnamed316,427
Plasmid unnamed4125,849
Plasmid unnamed59,964

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter kobeiEnterobacter kobei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729765.1Enterobacter kobeitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729765.1Enterobacter kobeitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1382.4386.94
Best-match type99.1382.4386.94

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna