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Source database (GenBank or RefSeq) File type

UCBerk_Dsub_1.0

Organism name:

Drosophila subobscura (flies)

Isolate:

14011-0131.10

Sex:

female

BioSample:

SAMN11963385

BioProject:

PRJNA545704

Submitter:

UC Berkeley

Date:

2019/08/28

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_008121235.1 (latest)

RefSeq assembly accession:

GCF_008121235.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

VHIH01

Assembly method:

wtdbg2 v. 2019

Expected final version:

yes

Genome coverage:

118.0x

Sequencing technology:

Oxford Nanopore

IDs: 4439451 [UID] 13447698 [GenBank] 19792868 [RefSeq]

See Genome Information for Drosophila subobscura

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_008121235.1	≠	GCF_008121235.1	UCBerk_Dsub_1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	126,248,017
Total ungapped length	126,236,017
Gaps between scaffolds	0
Number of scaffolds	32
Scaffold N50	24,182,865
Scaffold L50	3
Number of contigs	56
Contig N50	11,370,518
Contig L50	4
Total number of chromosomes and plasmids	7
Number of component sequences (WGS or clone)	32

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A	CM017782.1	=	NC_048530.1	0
Chromosome E	CM017783.1	=	NC_048531.1	0
Chromosome J	CM017784.1	=	NC_048532.1	0
Chromosome O	CM017785.1	=	NC_048533.1	0
Chromosome U	CM017786.1	=	NC_048534.1	0
Chromosome dot	CM017787.1	=	NC_048535.1	0
unplaced	n/a	n/a	n/a	25

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	126,232,139	31	126,220,139	24,182,865	24
Chromosome A	24,182,865	1	24,178,865	24,182,865	8
Chromosome E	20,343,353	1	20,343,353	20,343,353	0
Chromosome J	23,815,339	1	23,811,839	23,815,339	7
Chromosome O	30,159,154	1	30,158,154	30,159,154	2
Chromosome U	25,941,769	1	25,939,769	25,941,769	4
Chromosome dot	1,505,893	1	1,504,393	1,505,893	3
unplaced	283,766	25	283,766	12,826	0

Assembly

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UCBerk_Dsub_1.0

See Genome Information for Drosophila subobscura

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear