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ASM792318v1

Organism name:
Pediococcus pentosaceus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: SL001
BioSample:
SAMN11094516
BioProject:
PRJNA526333
Submitter:
Hunan Normal University
Date:
2019/08/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_007923185.1 (latest)
RefSeq assembly accession:
GCF_007923185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 1.3
Expected final version:
yes
Reference guided assembly:
canu
Genome coverage:
5758.0x
Sequencing technology:
Oxford Nanopore GridION

IDs: 4301631 [UID] 13114888 [GenBank] 13188068 [RefSeq]

See Genome Information for Pediococcus pentosaceus

Pathogen Detection Resources

There are 179 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from State Key Laboratory of Development Biology of Freshwater Fishes
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_007923185.1-RS_2024_04_03
Annotation Date::04/03/2024 03:46:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,940
CDSs (total)::1,866
Genes (coding)::1,830
CDSs (with protein)::1,830
Genes (RNA)::74
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::56
ncRNAs::3
Pseudo Genes (total)::36
CDSs (without protein)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::13 of 36
Pseudo Genes (incomplete)::17 of 36
Pseudo Genes (internal stop)::13 of 36
Pseudo Genes (multiple problems)::7 of 36
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,919,175
Total ungapped length1,919,175
Total number of chromosomes and plasmids2

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_007923195.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP039378.1=NZ_CP039378.1
Plasmid pSL001-1CP039379.1=NZ_CP039379.1

Assembly statistics

MoleculeTotal
Length
All1,919,175
Chromosome 1,842,476
Plasmid pSL001-176,699

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pediococcus pentosaceusPediococcus pentosaceus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016127775.1Pediococcus pentosaceustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016127775.1Pediococcus pentosaceustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0583.5591.53
Best-match type99.0583.5591.53

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna