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ASM782688v1

Organism name:
Candidatus Nitrosocosmicus arcticus (archaea)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Kfb
BioSample:
SAMN10440610
BioProject:
PRJNA505990
Submitter:
University of Vienna
Date:
2019/07/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_007826885.1 (latest)
RefSeq assembly accession:
GCF_007826885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VOAH01
Assembly method:
SPAdes v. 3.7.0
Expected final version:
no
Genome coverage:
1500x
Sequencing technology:
Illumina HiSeq; IonTorrent

IDs: 4253351 [UID] 12983528 [GenBank] 13031778 [RefSeq]

See Genome Information for Candidatus Nitrosocosmicus arcticus

Pathogen Detection Resources

History (Show revision history)

Comment

Bacteria and source DNA available from Schleper, Archaea Biology and Ecogenomics, University of Vienna, Vienna, Austria

Global statistics

Total sequence length2,644,860
Total ungapped length2,644,479
Gaps between scaffolds0
Number of scaffolds22
Scaffold N50174,566
Scaffold L506
Number of contigs27
Contig N50174,566
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)27

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,644,860222,644,479174,56650

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Nitrosocosmicus arcticusCandidatus Nitrosocosmicus arcticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana