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Source database (GenBank or RefSeq) File type

ASM674206v1

Organism name:: Clostridium butyricum (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: NBRC:13949
Infraspecific name:: Strain: NBRC 13949
BioSample:: SAMD00169824
BioProject:: PRJDB8042
Submitter:: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)
Date:: 2019/06/11
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_006742065.1 (latest)
RefSeq assembly accession:: GCF_006742065.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. 0.4.4
Genome coverage:: 315x
Sequencing technology:: Illumina MiSeq; ONT GridION

IDs: 3690331 [UID] 11804968 [GenBank] 11978198 [RefSeq]

See Genome Information for Clostridium butyricum

Pathogen Detection Resources

There are 208 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_006742065.1	=	GCF_006742065.1	ASM674206v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Annotated at DFAST https://dfast.nig.ac.jp/


The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_006742065.1-RS_2024_04_14
Annotation Date::04/14/2024 20:36:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,329
CDSs (total)::4,208
Genes (coding)::4,168
CDSs (with protein)::4,168
Genes (RNA)::121
rRNAs::12, 12, 12 (5S, 16S, 23S)
complete rRNAs::12, 12, 12 (5S, 16S, 23S)
tRNAs::81
ncRNAs::4
Pseudo Genes (total)::40
CDSs (without protein)::40
Pseudo Genes (ambiguous residues)::0 of 40
Pseudo Genes (frameshifted)::7 of 40
Pseudo Genes (incomplete)::24 of 40
Pseudo Genes (internal stop)::14 of 40
Pseudo Genes (multiple problems)::4 of 40
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,705,096
Total ungapped length	4,705,096
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AP019716.1	=	NZ_AP019716.1
Plasmid pCBU1	AP019717.1	=	NZ_AP019717.1
Plasmid pCBU2	AP019718.1	=	NZ_AP019718.1
Plasmid pCBU3	AP019719.1	=	NZ_AP019719.1

Molecule	Total Length
All	4,705,096
Chromosome	3,920,778
Plasmid pCBU1	770,199
Plasmid pCBU2	8,060
Plasmid pCBU3	6,059

	ANI	Query coverage	Subject coverage
Declared type	99.99	100.00	99.99
Best-match type	99.99	100.00	99.99

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ASM674206v1

See Genome Information for Clostridium butyricum

Pathogen Detection Resources

There are 208 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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