U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM537762v1

Organism name:
Desulfoglaeba alkanexedens ALDC (bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:BAA-1302
Infraspecific name:
Strain: ALDC
BioSample:
SAMN11582078
BioProject:
PRJNA541298
Submitter:
University of Oklahoma
Date:
2019/05/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_005377625.1 (latest)
RefSeq assembly accession:
GCF_005377625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2
Expected final version:
yes
Genome coverage:
275.0x
Sequencing technology:
PacBio RS

IDs: 2868451 [UID] 9994068 [GenBank] 10138208 [RefSeq]

See Genome Information for Desulfoglaeba alkanexedens

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_005377625.1-RS_2024_05_04
Annotation Date::05/04/2024 03:35:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,030
CDSs (total)::2,973
Genes (coding)::2,915
CDSs (with protein)::2,915
Genes (RNA)::57
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::58
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::18 of 58
Pseudo Genes (incomplete)::45 of 58
Pseudo Genes (internal stop)::11 of 58
Pseudo Genes (multiple problems)::15 of 58
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,365,583
Total ungapped length3,365,583
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_005377655.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP040098.1=NZ_CP040098.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,365,583

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfoglaeba alkanexedens ALDCDesulfoglaeba alkanexedens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010499435.1Dissulfurirhabdus thermomarinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.040.450.59

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected