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ASM528075v1

Organism name:: Coxiella burnetii (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: RSA439
BioSample:: SAMN11578543
BioProject:: PRJNA541166
Submitter:: University of Exeter
Date:: 2019/05/12
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly designated as reftype
GenBank assembly accession:: GCA_005280755.1 (latest)
RefSeq assembly accession:: GCF_005280755.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. 0.4.0
Expected final version:: yes
Genome coverage:: 100.0x
Sequencing technology:: Illumina HiSeq; Oxford Nanopore GridION

IDs: 2819871 [UID] 9895098 [GenBank] 9936738 [RefSeq]

See Genome Information for Coxiella burnetii

Pathogen Detection Resources

There are 154 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005280755.1	=	GCF_005280755.1	ASM528075v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::07/25/2023 03:56:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,279
CDSs (total)::2,229
Genes (coding)::2,102
CDSs (with protein)::2,102
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::127
CDSs (without protein)::127
Pseudo Genes (ambiguous residues)::0 of 127
Pseudo Genes (frameshifted)::70 of 127
Pseudo Genes (incomplete)::66 of 127
Pseudo Genes (internal stop)::16 of 127
Pseudo Genes (multiple problems)::25 of 127
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,006,529
Total ungapped length	2,006,529
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP040059.1	=	NZ_CP040059.1
Plasmid pQpH1	CP040060.1	=	NZ_CP040060.1

Molecule	Total Length
All	2,006,529
Chromosome	1,969,211
Plasmid pQpH1	37,318

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	85.74	0.23	0.12

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ASM528075v1

See Genome Information for Coxiella burnetii

Pathogen Detection Resources

There are 154 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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