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ASM436300v1

Organism name:
Tenacibaculum caenipelagi (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CECT 8283
BioSample:
SAMN09074749
BioProject:
PRJNA463312
Submitter:
DOE Joint Genome Institute
Date:
2019/03/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004363005.1 (latest)
RefSeq assembly accession:
GCF_004363005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SNYH01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
no
Genome coverage:
359.0x
Sequencing technology:
Illumina HiSeq

IDs: 2352521 [UID] 8770678 [GenBank] 8784328 [RefSeq]

See Genome Information for Tenacibaculum caenipelagi

History (Show revision history)

Comment

Global statistics

Total sequence length3,266,771
Total ungapped length3,266,097
Gaps between scaffolds0
Number of scaffolds14
Scaffold N50459,598
Scaffold L503
Number of contigs21
Contig N50340,625
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,266,771143,266,097459,59870

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Tenacibaculum caenipelagiTenacibaculum caenipelagi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003867015.1Tenacibaculum singaporensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.5964.7060.18

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected