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ASM435818v1

Organism name:
Antarcticimicrobium luteum (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:30927
Infraspecific name:
Strain: 318-1
BioSample:
SAMN11098708
BioProject:
PRJNA526421
Submitter:
kyonggi University
Date:
2019/03/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004358185.1 (latest)
RefSeq assembly accession:
GCF_004358185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SMUV01
Assembly method:
HGAP v. 2.0
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
PacBio RSII

IDs: 2349981 [UID] 8762278 [GenBank] 8766718 [RefSeq]

See Genome Information for Antarcticimicrobium luteum

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from JCM30927

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/14/2019 18:05:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,465
CDSs (total)::4,415
Genes (coding)::4,347
CDSs (with protein)::4,347
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::3
Pseudo Genes (total)::68
CDSs (without protein)::68
Pseudo Genes (ambiguous residues)::0 of 68
Pseudo Genes (frameshifted)::17 of 68
Pseudo Genes (incomplete)::51 of 68
Pseudo Genes (internal stop)::10 of 68
Pseudo Genes (multiple problems)::9 of 68
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,663,068
Total ungapped length4,663,068
Number of contigs74
Contig N50150,217
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)74

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,663,068744,663,068150,21700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Antarcticimicrobium luteumAntarcticimicrobium luteum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004348975.1Antarcticimicrobium sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.9255.8156.45

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected