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ASM435322v1

Organism name:
Marinobacter sp. JH2 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: sp.
Isolate:
JH2
BioSample:
SAMN11099592
BioProject:
PRJNA526490
Submitter:
Georg-August-University Goettingen
Date:
2019/03/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_004353225.1 (latest)
RefSeq assembly accession:
GCF_004353225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.4
Genome coverage:
not specified
Sequencing technology:
Illumina; Oxford Nanopore

IDs: 2347591 [UID] 8745628 [GenBank] 8757188 [RefSeq]

See Genome Information for Marinobacter sp. JH2

History (Show revision history)

Comment

Bacteria and source DNA available from Prof. Dr. Rolf Daniel
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/04/2024 22:35:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,386
CDSs (total)::3,319
Genes (coding)::3,306
CDSs (with protein)::3,306
Genes (RNA)::67
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::13
CDSs (without protein)::13
Pseudo Genes (ambiguous residues)::0 of 13
Pseudo Genes (frameshifted)::3 of 13
Pseudo Genes (incomplete)::10 of 13
Pseudo Genes (internal stop)::0 of 13
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,721,518
Total ungapped length3,721,518
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004353235.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP037934.1=NZ_CP037934.1
Plasmid p36788CP037935.1=NZ_CP037935.1

Assembly statistics

MoleculeTotal
Length
All3,721,518
Chromosome 3,684,730
Plasmid p3678836,788

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Marinobacter sp. JH2Marinobacter sp. JH2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003336705.1Marinobacter litoralistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.2879.3385.51

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna