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ASM434502v1

Organism name:
Rheinheimera sp. D18 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: D18
BioSample:
SAMN11047479
BioProject:
PRJNA525346
Submitter:
Shandong First Medical University
Date:
2019/03/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_004345025.1 (latest)
RefSeq assembly accession:
GCF_004345025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. Nov-2018
Expected final version:
yes
Genome coverage:
343.0x
Sequencing technology:
PacBio RSII; Illumina NextSeq

IDs: 2343521 [UID] 8735668 [GenBank] 8752398 [RefSeq]

See Genome Information for Rheinheimera sp. D18

History (Show revision history)

Comment

Bacteria and source DNA available from Guangxiang Cao from Shandong First Medical University
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_004345025.1-RS_2024_05_30
Annotation Date::05/30/2024 02:20:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,106
CDSs (total)::3,018
Genes (coding)::2,993
CDSs (with protein)::2,993
Genes (RNA)::88
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::69
ncRNAs::4
Pseudo Genes (total)::25
CDSs (without protein)::25
Pseudo Genes (ambiguous residues)::0 of 25
Pseudo Genes (frameshifted)::6 of 25
Pseudo Genes (incomplete)::17 of 25
Pseudo Genes (internal stop)::3 of 25
Pseudo Genes (multiple problems)::1 of 25
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,308,353
Total ungapped length3,308,353
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004345035.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP037745.1=NZ_CP037745.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,308,353

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rheinheimera sp. D18Rheinheimera sp. D18

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_036983985.1Rheinheimera metalliduranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.1483.9588.20

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna