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ASM433957v1

Organism name:
Phorcysia thermohydrogeniphila (bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:24425
Infraspecific name:
Strain: DSM 24425
BioSample:
SAMN07621466
BioProject:
PRJNA402449
Submitter:
DOE Joint Genome Institute
Date:
2019/03/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004339575.1 (latest)
RefSeq assembly accession:
GCF_004339575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SMFV01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
no
Genome coverage:
692.0x
Sequencing technology:
Illumina HiSeq

IDs: 2341101 [UID] 8723608 [GenBank] 8751898 [RefSeq]

See Genome Information for Phorcysia thermohydrogeniphila

History (Show revision history)

Comment

Global statistics

Total sequence length1,621,410
Total ungapped length1,621,139
Gaps between scaffolds0
Number of scaffolds8
Scaffold N50327,746
Scaffold L502
Number of contigs9
Contig N50327,746
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)8

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,621,41081,621,139327,74610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phorcysia thermohydrogeniphilaPhorcysia thermohydrogeniphila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900182585.1Balnearium lithotrophicumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.943.363.15

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected