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ASM421669v1

Organism name:
Pigmentiphaga kullae (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:13608
Infraspecific name:
Strain: K24
BioSample:
SAMN10866310
BioProject:
PRJNA520317
Submitter:
DOE Joint Genome Institute
Date:
2019/02/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004216695.1 (latest)
RefSeq assembly accession:
GCF_004216695.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SGXC01
Assembly method:
SPAdes v. 3.12.0
Expected final version:
no
Genome coverage:
241.0x
Sequencing technology:
Illumina

IDs: 2281231 [UID] 8557698 [GenBank] 8635528 [RefSeq]

See Genome Information for Pigmentiphaga kullae

History (Show revision history)

Comment

Global statistics

Total sequence length6,220,214
Total ungapped length6,220,214
Number of contigs5
Contig N501,800,729
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,220,21456,220,2141,800,72900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pigmentiphaga kullaePigmentiphaga kullae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_039523035.1Pigmentiphaga daeguensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.3377.6777.40

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected