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ASM413593v1

Organism name:
Methylovirgula ligni (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:19998
Infraspecific name:
Strain: BW863
BioSample:
SAMN08095357
BioProject:
PRJNA419673
Submitter:
Chungbuk National University
Date:
2019/02/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004135935.1 (latest)
RefSeq assembly accession:
GCF_004135935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
RS HGAP Assembly v. v3.0
Expected final version:
yes
Genome coverage:
20.0x
Sequencing technology:
PacBio

IDs: 2227861 [UID] 8395258 [GenBank] 8434278 [RefSeq]

See Genome Information for Methylovirgula ligni

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_004135935.1-RS_2024_05_01
Annotation Date::05/01/2024 03:22:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,238
CDSs (total)::3,186
Genes (coding)::3,167
CDSs (with protein)::3,167
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::4
Pseudo Genes (total)::19
CDSs (without protein)::19
Pseudo Genes (ambiguous residues)::0 of 19
Pseudo Genes (frameshifted)::6 of 19
Pseudo Genes (incomplete)::13 of 19
Pseudo Genes (internal stop)::1 of 19
Pseudo Genes (multiple problems)::1 of 19
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,298,588
Total ungapped length3,298,588
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004135945.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP025086.1=NZ_CP025086.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,298,588

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylovirgula ligniMethylovirgula ligni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003387225.1Methylovirgula lignitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003387225.1Methylovirgula lignitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8099.98
Best-match type99.9999.8099.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna