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mPhyDis1_v1.p

Organism name:
Phyllostomus discolor (pale spear-nosed bat)
Isolate:
MPI-MPIP mPhyDis1
Sex:
male
BioSample:
SAMN09948786
BioProject:
PRJNA489141
Submitter:
Vertebrate Genomes Project
Date:
2019/05/16
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_004126475.2 (replaced)
RefSeq assembly accession:
GCF_004126475.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
RXPA01
Assembly method:
FALCON v. 5.1.1; ALCON-Unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve v. BspQI/BssSI 3.2.1; Salsa2 v. HiC 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018
Expected final version:
no
Genome coverage:
65.8x
Sequencing technology:
PacBio Sequel; 10X Genomics linked reads; Bioanano Genomics 2 enzyme; Arima Genomics HiC
Linked assembly:
GCA_004115245.1 (alternate pseudohaplotype of diploid)

IDs: 2926931 [UID] 10111718 [GenBank] 8650938 [RefSeq]

See Genome Information for Phyllostomus discolor

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

In May 2019 the mitochondrial sequence (RXPA01000142) was added to this 01 version of RXPA00000000.
This assembly represents the primary haplotype of the diploid genome Phyllostomus discolor and includes the chromosomes. The alternate haplotype sequences are in WGS project RXPB00000000.

Global statistics

Total sequence length2,117,764,065
Total ungapped length2,094,797,627
Gaps between scaffolds0
Number of scaffolds141
Scaffold N50110,241,909
Scaffold L506
Number of contigs964
Contig N506,892,556
Contig L5094
Total number of chromosomes and plasmids16
Number of component sequences (WGS or clone)141

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_004126485.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM014254.1=NC_040903.11
Chromosome 2CM014255.1=NC_040904.11
Chromosome 3CM014256.1=NC_040905.10
Chromosome 4CM014257.1=NC_040906.11
Chromosome 5CM014258.1=NC_040907.10
Chromosome 6CM014259.1=NC_040908.10
Chromosome 7CM014260.1=NC_040909.11
Chromosome 8CM014261.1=NC_040910.11
Chromosome 9CM014262.1=NC_040911.10
Chromosome 10CM014263.1=NC_040912.10
Chromosome 11CM014264.1=NC_040913.10
Chromosome 12CM014265.1=NC_040914.10
Chromosome 13CM014266.1=NC_040915.10
Chromosome 14CM014267.1=NC_040916.12
Chromosome 15CM014268.1=NC_040917.11
Chromosome 16CM014269.1=NC_040918.10
unplacedn/an/an/a117

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,117,764,0651412,094,797,627110,241,9098230
Chromosome 1AllAssembled moleculeUnlocalized scaffolds214,888,016205,573,1019,314,915211213,396,915204,205,1519,191,764205,573,101205,573,1019,314,91565614000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds212,944,483110,241,909102,702,574211211,567,052109,720,967101,846,085110,241,909110,241,909102,702,574532132000
Chromosome 3Assembled molecule210,685,4611209,811,794210,685,461590
Chromosome 4AllAssembled moleculeUnlocalized scaffolds205,440,675200,289,5525,151,123211204,190,631199,039,5085,151,123200,289,552200,289,5525,151,12343430000
Chromosome 5Assembled molecule175,149,0171174,416,683175,149,017520
Chromosome 6Assembled molecule170,176,9781168,116,503170,176,978510
Chromosome 7AllAssembled moleculeUnlocalized scaffolds140,909,63691,367,97249,541,664211139,331,99889,808,70949,523,28991,367,97291,367,97249,541,66431238000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds115,335,25696,947,40518,387,851211114,763,94796,581,95118,181,99696,947,40596,947,40518,387,85142339000
Chromosome 9Assembled molecule107,516,9431104,100,365107,516,9431150
Chromosome 10Assembled molecule105,682,0271105,350,896105,682,027280
Chromosome 11Assembled molecule94,649,528194,316,59094,649,528310
Chromosome 12Assembled molecule94,380,556194,089,34794,380,556290
Chromosome 13Assembled molecule75,523,858174,902,45175,523,858200
Chromosome 14AllAssembled moleculeUnlocalized scaffolds74,343,63731,413,00942,930,62831271,623,62028,863,87342,759,74730,311,58731,413,00930,311,58746379000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds48,556,23626,662,04421,894,19221148,412,34226,547,03421,865,30826,662,04426,662,04421,894,1921596000
Chromosome 16Assembled molecule24,177,217124,139,67824,177,21790
unplacedAssembled molecule47,404,54111742,266,8153,040,1821340