U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM395725v1

Organism name:
Actinotignum sanguinis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 26039
BioSample:
SAMN08967871
BioProject:
PRJNA451308
Submitter:
Chinese Center for Disease Control and Prevention
Date:
2018/12/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003957255.1 (latest)
RefSeq assembly accession:
GCF_003957255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QDIE01
Assembly method:
Velvet v. 1.2.09
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 2174021 [UID] 8109458 [GenBank] 8136598 [RefSeq]

See Genome Information for Actinotignum sanguinis

There are 24 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/25/2018 14:54:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,750
CDS (total)::1,694
Genes (coding)::1,661
CDS (coding)::1,661
Genes (RNA)::56
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (5S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::6 of 33
Pseudo Genes (incomplete)::24 of 33
Pseudo Genes (internal stop)::4 of 33
Pseudo Genes (multiple problems)::1 of 33
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,038,007
Total ungapped length2,038,007
Number of contigs60
Contig N5056,796
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)60

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,038,007602,038,00756,79600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinotignum sanguinisActinotignum sanguinis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900155575.1Actinotignum timonensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.8882.9273.88

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected