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ASM378908v1

Organism name:
Penaeus vannamei (Pacific white shrimp)
Infraspecific name:
Breed: Kehai No.1
Sex:
male
BioSample:
SAMN08721527
BioProject:
PRJNA438564
Submitter:
Institute of Oceanology, Chinese Academy of Sciences
Date:
2018/11/16
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003789085.1 (latest)
RefSeq assembly accession:
GCF_003789085.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
QCYY01
Assembly method:
WTDBG v. 1.2
Expected final version:
yes
Genome coverage:
84.0x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 2106361 [UID] 7871408 [GenBank] 8054448 [RefSeq]

See Genome Information for Penaeus vannamei

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,663,581,301
Total ungapped length1,618,053,608
Gaps between scaffolds0
Number of scaffolds4,683
Scaffold N50605,555
Scaffold L50892
Number of contigs33,020
Contig N5086,864
Contig L505,435
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)4,683

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,663,565,3114,6821,618,037,618605,55528,3370
MoleculeTotal
Length
Mitochondrion MT15,990