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ASM373227v1

Organism name:: Pseudomonas frederiksbergensis (g-proteobacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: 36C6
BioSample:: SAMN05933935
BioProject:: PRJNA342848
Submitter:: Ohio State university
Date:: 2018/11/15
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003732275.1 (latest)
RefSeq assembly accession:: GCF_003732275.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: MOBM01
Assembly method:: CLC assembly cell v. 4.0
Expected final version:: yes
Genome coverage:: 100.0x
Sequencing technology:: Illumina MiSeq

IDs: 2077951 [UID] 7804118 [GenBank] 7891298 [RefSeq]

See Genome Information for Pseudomonas frederiksbergensis

Pathogen Detection Resources

There are 20 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003732275.1	=	GCF_003732275.1	ASM373227v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Christopher G. Taylor lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Date::10/31/2016 17:53:31
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::3.3
Genes (total)::6,492
CDS (total)::6,422
Genes (coding)::6,310
CDS (coding)::6,310
Genes (RNA)::70
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::112
Pseudo Genes (ambiguous residues)::2 of 112
Pseudo Genes (frameshifted)::49 of 112
Pseudo Genes (incomplete)::59 of 112
Pseudo Genes (internal stop)::15 of 112
Pseudo Genes (multiple problems)::12 of 112
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	7,235,500
Total ungapped length	7,233,824
Gaps between scaffolds	0
Number of scaffolds	44
Scaffold N50	374,335
Scaffold L50	5
Number of contigs	56
Contig N50	369,264
Contig L50	6
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	44

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	94.95	72.95	81.37

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ASM373227v1

See Genome Information for Pseudomonas frederiksbergensis

Pathogen Detection Resources

There are 20 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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