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ASM368866v1

Organism name:
Hydrogenothermus marinus (aquificales)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:12046
Infraspecific name:
Strain: VM1
BioSample:
SAMN07620873
BioProject:
PRJNA402461
Submitter:
DOE Joint Genome Institute
Date:
2018/10/25
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003688665.1 (latest)
RefSeq assembly accession:
GCF_003688665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
REFO01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
no
Genome coverage:
722.0x
Sequencing technology:
Illumina HiSeq

IDs: 2033741 [UID] 7637608 [GenBank] 7642608 [RefSeq]

See Genome Information for Hydrogenothermus marinus

History (Show revision history)

Comment

Global statistics

Total sequence length1,604,000
Total ungapped length1,603,524
Gaps between scaffolds0
Number of scaffolds18
Scaffold N50372,577
Scaffold L502
Number of contigs19
Contig N50372,577
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,604,000181,603,524372,57710

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Hydrogenothermus marinusHydrogenothermus marinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004365575.1Hypnocyclicus thermotrophustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.330.070.05

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected