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ASM368844v1

Organism name:
Metamycoplasma subdolum (bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: ATCC:29870
Infraspecific name:
Strain: ATCC 29870
BioSample:
SAMN02982983
BioProject:
PRJNA257863
Submitter:
DOE Joint Genome Institute
Date:
2018/10/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003688445.1 (latest)
RefSeq assembly accession:
GCF_003688445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
REFI01
Assembly method:
AllPaths v. r46652
Expected final version:
no
Genome coverage:
1706.0x
Sequencing technology:
Illumina HiSeq

IDs: 2033631 [UID] 7637368 [GenBank] 7642988 [RefSeq]

See Genome Information for Metamycoplasma subdolum

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length651,570
Total ungapped length651,570
Number of contigs13
Contig N5090,435
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced651,57013651,57090,43500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Metamycoplasma subdolumMetamycoplasma subdolum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_033546815.1Metamycoplasma subdolumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_033546815.1Metamycoplasma subdolumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.5299.06
Best-match type99.9999.5299.06

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna