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Source database (GenBank or RefSeq) File type

ASM357664v1

Organism name:

Ipomoea triloba (trilobed morning glory)

Infraspecific name:

Cultivar: NCNSP0323

BioSample:

SAMN08285276

BioProject:

PRJNA428241

Submitter:

Cornell University

Date:

2018/09/19

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_003576645.1 (latest)

RefSeq assembly accession:

GCF_003576645.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

Assembly method:

SOAPdenovo v. v2; SSPACE v. v2.0; PBJelly v. v15.8.24; Pilon v. v1.13

Expected final version:

yes

Genome coverage:

290.0x

Sequencing technology:

Illumina HiSeq; PacBio

IDs: 1982921 [UID] 7462798 [GenBank] 14101578 [RefSeq]

See Genome Information for Ipomoea triloba

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003576645.1	≠	GCF_003576645.1	ASM357664v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Name::Ipomoea triloba Annotation Release 100
Annotation Version::100
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::8.2
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	461,989,178
Total ungapped length	437,727,361
Gaps between scaffolds	0
Number of scaffolds	17
Scaffold N50	29,809,665
Scaffold L50	7
Number of contigs	16,008
Contig N50	74,678
Contig L50	1,824
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	17

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP025660.1	=	NC_044916.1
Chromosome 2	CP025661.1	=	NC_044917.1
Chromosome 3	CP025662.1	=	NC_044918.1
Chromosome 4	CP025663.1	=	NC_044919.1
Chromosome 5	CP025664.1	=	NC_044920.1
Chromosome 6	CP025665.1	=	NC_044921.1
Chromosome 7	CP025666.1	=	NC_044922.1
Chromosome 8	CP025667.1	=	NC_044923.1
Chromosome 9	CP025668.1	=	NC_044924.1
Chromosome 10	CP025669.1	=	NC_044925.1
Chromosome 11	CP025670.1	=	NC_044926.1
Chromosome 12	CP025671.1	=	NC_044927.1
Chromosome 13	CP025672.1	=	NC_044928.1
Chromosome 14	CP025673.1	=	NC_044929.1
Chromosome 15	CP025674.1	=	NC_044930.1
Chromosome 16	CP025675.1	=	NC_044931.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	461,827,428	16	437,565,611	29,809,665	15,991
Chromosome 1	38,093,535	1	36,342,076	38,093,535	948
Chromosome 2	27,168,338	1	26,512,361	27,168,338	593
Chromosome 3	33,448,119	1	32,215,294	33,448,119	858
Chromosome 4	36,343,649	1	35,175,132	36,343,649	845
Chromosome 5	32,570,749	1	31,397,972	32,570,749	781
Chromosome 6	27,638,998	1	26,950,068	27,638,998	620
Chromosome 7	28,894,297	1	27,642,239	28,894,297	770
Chromosome 8	20,907,540	1	20,083,714	20,907,540	561
Chromosome 9	31,790,738	1	30,725,374	31,790,738	724
Chromosome 10	29,809,665	1	28,708,332	29,809,665	735
Chromosome 11	25,640,617	1	24,684,543	25,640,617	650
Chromosome 12	28,340,316	1	27,132,510	28,340,316	709
Chromosome 13	32,066,333	1	30,699,580	32,066,333	861
Chromosome 14	23,651,743	1	22,806,885	23,651,743	586
Chromosome 15	27,111,266	1	26,188,331	27,111,266	662
Chromosome 16	18,351,525	1	10,301,200	18,351,525	5,088

Assembly

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ASM357664v1

See Genome Information for Ipomoea triloba

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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Assembly Unit Name
Primary Assembly
non-nuclear