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ASM334056v1

Organism name:
Rhodovulum sp. 12E13 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 12E13
BioSample:
SAMN09245960
BioProject:
PRJNA472870
Submitter:
Shangdong University
Date:
2018/07/25
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003340565.1 (latest)
RefSeq assembly accession:
GCF_003340565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QPLK01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 1834511 [UID] 6947328 [GenBank] 7030918 [RefSeq]

See Genome Information for Rhodovulum sp. 12E13

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/20/2018 16:16:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,276
CDS (total)::4,227
Genes (coding)::4,109
CDS (coding)::4,109
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::43
ncRNAs::3
Pseudo Genes (total)::118
Pseudo Genes (ambiguous residues)::0 of 118
Pseudo Genes (frameshifted)::26 of 118
Pseudo Genes (incomplete)::94 of 118
Pseudo Genes (internal stop)::17 of 118
Pseudo Genes (multiple problems)::15 of 118
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,529,615
Total ungapped length4,529,585
Gaps between scaffolds0
Number of scaffolds127
Scaffold N50148,110
Scaffold L509
Number of contigs130
Contig N50148,110
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)127

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,529,6151274,529,585148,11030

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhodovulum sp. 12E13Rhodovulum sp. 12E13

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003298775.1Rhodosalinus halophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.2512.7014.86

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna