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Source database (GenBank or RefSeq) File type

ASM333331v1

Organism name:: Acidiferrobacter thiooxydans (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: DSM:2392; JCM:17358
Infraspecific name:: Strain: m-1
BioSample:: SAMN08523060
BioProject:: PRJNA433899
Submitter:: Fundacion Ciencia & Vida
Date:: 2018/07/21
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_003333315.1 (latest)
RefSeq assembly accession:: GCF_003333315.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PSYR01
Assembly method:: Canu v. 1.3
Expected final version:: yes
Genome coverage:: 400.0x
Sequencing technology:: PacBio

IDs: 1830801 [UID] 6932328 [GenBank] 6949578 [RefSeq]

See Genome Information for Acidiferrobacter thiooxydans

Pathogen Detection Resources

There are 16 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003333315.1	=	GCF_003333315.1	ASM333331v1	Contig	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from JCM 17358 / DSM 2392.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/13/2018 16:42:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,142
CDS (total)::3,090
Genes (coding)::2,957
CDS (coding)::2,957
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::45
ncRNAs::4
Pseudo Genes (total)::133
Pseudo Genes (ambiguous residues)::0 of 133
Pseudo Genes (frameshifted)::88 of 133
Pseudo Genes (incomplete)::45 of 133
Pseudo Genes (internal stop)::18 of 133
Pseudo Genes (multiple problems)::15 of 133
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,251,406
Total ungapped length	3,251,406
Number of contigs	4
Contig N50	1,759,369
Contig L50	1
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	4

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	87.90	0.16	0.12

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ASM333331v1

See Genome Information for Acidiferrobacter thiooxydans

Pathogen Detection Resources

There are 16 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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