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ASM320228v1

Organism name:
Prauserella muralis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:45305
Infraspecific name:
Strain: DSM 45305
BioSample:
SAMN05284053
BioProject:
PRJNA326529
Submitter:
Bielefeld University
Date:
2018/07/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003202285.1 (latest)
RefSeq assembly accession:
GCF_003202285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MASW01
Assembly method:
Newbler v. 2.8
Expected final version:
yes
Genome coverage:
27.5x
Sequencing technology:
Illumina

IDs: 1784941 [UID] 6751548 [GenBank] 6842798 [RefSeq]

See Genome Information for Prauserella muralis

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/06/2016 11:12:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,234
CDS (total)::7,171
Genes (coding)::7,049
CDS (coding)::7,049
Genes (RNA)::63
rRNAs::3, 4, 4 (5S, 16S, 23S)
complete rRNAs::3, 4, 4 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::122
Pseudo Genes (ambiguous residues)::0 of 122
Pseudo Genes (frameshifted)::49 of 122
Pseudo Genes (incomplete)::80 of 122
Pseudo Genes (internal stop)::8 of 122
Pseudo Genes (multiple problems)::15 of 122
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,467,757
Total ungapped length7,467,757
Number of contigs24
Contig N501,738,757
Contig L502
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)24

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003202305.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Plasmid pPmurDSM45305CM009984.1=NZ_CM009984.10
unplacedn/an/an/a23

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
All7,467,757247,467,7571,738,75700
Plasmid pPmurDSM45305124,0281124,028124,02800
unplaced7,343,729237,343,7291,738,75700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prauserella muralisPrauserella muralis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007993965.1Prauserella muralistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007993965.1Prauserella muralistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7899.64
Best-match type99.9999.7899.64

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna