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Source database (GenBank or RefSeq) File type

ASM312992v1

Organism name:: Bifidobacterium catulorum (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: DSM:103154T; JCM:31794T
Infraspecific name:: Strain: MRM 8.19
BioSample:: SAMN09081216
BioProject:: PRJNA464312
Submitter:: University of Bologna
Date:: 2018/05/16
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_003129925.1 (latest)
RefSeq assembly accession:: GCF_003129925.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QFFN01
Assembly method:: SPAdes v. 3.11
Expected final version:: yes
Genome coverage:: 10.0x
Sequencing technology:: Illumina

IDs: 1700741 [UID] 6499738 [GenBank] 6577468 [RefSeq]

See Genome Information for Bifidobacterium catulorum

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003129925.1	=	GCF_003129925.1	ASM312992v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from DSMZ.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::05/11/2018 10:48:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,122
CDS (total)::2,060
Genes (coding)::2,023
CDS (coding)::2,023
Genes (RNA)::62
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::37
Pseudo Genes (ambiguous residues)::0 of 37
Pseudo Genes (frameshifted)::14 of 37
Pseudo Genes (incomplete)::23 of 37
Pseudo Genes (internal stop)::2 of 37
Pseudo Genes (multiple problems)::2 of 37
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,611,484
Total ungapped length	2,611,342
Gaps between scaffolds	0
Number of scaffolds	93
Scaffold N50	62,484
Scaffold L50	11
Number of contigs	94
Contig N50	62,484
Contig L50	11
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	93

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	88.69	63.68	62.63

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ASM312992v1

See Genome Information for Bifidobacterium catulorum

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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