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ASM312140v1

Organism name:
Paraburkholderia sp. C35 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: C35
BioSample:
SAMN08706770
BioProject:
PRJNA445318
Submitter:
Monash University Malaysia
Date:
2018/05/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003121405.1 (latest)
RefSeq assembly accession:
GCF_003121405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QBUY01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
yes
Genome coverage:
71x
Sequencing technology:
Illumina NextSeq 500

IDs: 1698261 [UID] 6486378 [GenBank] 6540618 [RefSeq]

See Genome Information for Paraburkholderia sp. C35

Pathogen Detection Resources

History (Show revision history)

Comment

Bacteria available from Monash University Malaysia.

Global statistics

Total sequence length9,705,730
Total ungapped length9,705,334
Gaps between scaffolds0
Number of scaffolds224
Scaffold N5069,876
Scaffold L5039
Number of contigs229
Contig N5069,876
Contig L5039
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)224

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced9,705,7302249,705,33469,87650

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paraburkholderia sp. C35Paraburkholderia sp. C35

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002902925.1Paraburkholderia terraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.6161.1959.01

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna