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ASM293327v1

Organism name:
Marinobacter maroccanus (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: N4
BioSample:
SAMN08383635
BioProject:
PRJNA431080
Submitter:
Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona
Date:
2018/02/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002933275.1 (latest)
RefSeq assembly accession:
GCF_002933275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PSSX01
Assembly method:
A5-miseq v. 20160825
Expected final version:
yes
Genome coverage:
501.49x
Sequencing technology:
Illumina HiSeq

IDs: 1563961 [UID] 6029058 [GenBank] 6031868 [RefSeq]

See Genome Information for Marinobacter maroccanus

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/14/2018 12:14:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,007
CDS (total)::3,952
Genes (coding)::3,899
CDS (coding)::3,899
Genes (RNA)::55
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (5S)
tRNAs::45
ncRNAs::4
Pseudo Genes (total)::53
Pseudo Genes (ambiguous residues)::0 of 53
Pseudo Genes (frameshifted)::16 of 53
Pseudo Genes (incomplete)::34 of 53
Pseudo Genes (internal stop)::8 of 53
Pseudo Genes (multiple problems)::5 of 53
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,340,695
Total ungapped length4,340,695
Number of contigs61
Contig N50166,663
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,340,695614,340,695166,66300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Marinobacter maroccanusMarinobacter maroccanus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002933295.1Marinobacter flavimaristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2479.7377.53

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected