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ASM287241v1

Organism name:
Bacteriovorax stolpii (bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:12778
Infraspecific name:
Strain: DSM 12778
BioSample:
SAMN08275051
BioProject:
PRJNA427779
Submitter:
Zhejiang Academy of Agricultural Sciences
Date:
2018/01/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002872415.1 (latest)
RefSeq assembly accession:
GCF_002872415.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
canu v. NOV-2017
Expected final version:
yes
Genome coverage:
236.0x
Sequencing technology:
PacBio

IDs: 1516181 [UID] 5861998 [GenBank] 5885168 [RefSeq]

See Genome Information for Bacteriovorax stolpii

There are 13 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002872415.1-RS_2024_05_03
Annotation Date::05/03/2024 03:54:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,809
CDSs (total)::3,767
Genes (coding)::3,756
CDSs (with protein)::3,756
Genes (RNA)::42
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::33
ncRNAs::3
Pseudo Genes (total)::11
CDSs (without protein)::11
Pseudo Genes (ambiguous residues)::0 of 11
Pseudo Genes (frameshifted)::3 of 11
Pseudo Genes (incomplete)::7 of 11
Pseudo Genes (internal stop)::2 of 11
Pseudo Genes (multiple problems)::1 of 11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,810,309
Total ungapped length3,810,309
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002872425.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP025704.1=NZ_CP025704.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,810,309

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteriovorax stolpiiBacteriovorax stolpii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004362635.1Bacteriovorax stolpiisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004362635.1Bacteriovorax stolpiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.7499.98
Best-match type99.9999.7499.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna