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ASM279425v1

Organism name:: Streptomyces carminius (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: TRM SA0054
BioSample:: SAMN08005496
BioProject:: PRJNA417743
Submitter:: Tarim University
Date:: 2017/11/20
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_002794255.1 (latest)
RefSeq assembly accession:: GCF_002794255.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PGGW01
Assembly method:: SOAPdenovo v. 11-2017
Expected final version:: yes
Genome coverage:: 23.0x
Sequencing technology:: Illumina HiSeq

IDs: 1450751 [UID] 5675208 [GenBank] 5680198 [RefSeq]

See Genome Information for Streptomyces carminius

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002794255.1	=	GCF_002794255.1	ASM279425v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Bacteria.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::11/13/2017 19:41:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,509
CDS (total)::6,423
Genes (coding)::6,110
CDS (coding)::6,110
Genes (RNA)::86
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6 (5S, 16S)
partial rRNAs::6 (23S)
tRNAs::64
ncRNAs::3
Pseudo Genes (total)::313
Pseudo Genes (ambiguous residues)::6 of 313
Pseudo Genes (frameshifted)::98 of 313
Pseudo Genes (incomplete)::237 of 313
Pseudo Genes (internal stop)::29 of 313
Pseudo Genes (multiple problems)::54 of 313
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	7,200,897
Total ungapped length	7,199,788
Gaps between scaffolds	0
Number of scaffolds	71
Scaffold N50	300,464
Scaffold L50	9
Number of contigs	85
Contig N50	255,411
Contig L50	11
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	71

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	87.41	46.22	49.20

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ASM279425v1

See Genome Information for Streptomyces carminius

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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