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ASM256404v1

Organism name:
Amycolatopsis sulphurea (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:46092
Infraspecific name:
Strain: DSM 46092
BioSample:
SAMN04489728
BioProject:
PRJNA303750
Submitter:
DOE Joint Genome Institute
Date:
2017/10/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002564045.1 (latest)
RefSeq assembly accession:
GCF_002564045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PDJK01
Assembly method:
HGAP v. 2.3.0
Expected final version:
no
Genome coverage:
43.0x
Sequencing technology:
PacBio

IDs: 1334781 [UID] 5381548 [GenBank] 5423528 [RefSeq]

See Genome Information for Amycolatopsis sulphurea

History (Show revision history)

Comment

Global statistics

Total sequence length6,856,290
Total ungapped length6,856,290
Number of contigs2
Contig N505,507,604
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,856,29026,856,2905,507,60400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Amycolatopsis sulphureaAmycolatopsis sulphurea

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003600245.1Amycolatopsis panacistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.4581.2379.81

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected