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ASM255350v1

Organism name:
Mycolicibacterium agri (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CCUG37673
BioSample:
SAMN07733415
BioProject:
PRJNA354248
Submitter:
San Raffaele Scientific Institute
Date:
2017/10/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002553505.1 (latest)
RefSeq assembly accession:
GCF_002553505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PDCP01
Assembly method:
SPAdes v. 3.10
Expected final version:
yes
Genome coverage:
35.6x
Sequencing technology:
Illumina

IDs: 1329361 [UID] 5353128 [GenBank] 5392188 [RefSeq]

See Genome Information for Mycolicibacterium agri

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/10/2017 15:12:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,829
CDS (total)::6,774
Genes (coding)::6,487
CDS (coding)::6,487
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::287
Pseudo Genes (ambiguous residues)::0 of 287
Pseudo Genes (frameshifted)::126 of 287
Pseudo Genes (incomplete)::161 of 287
Pseudo Genes (internal stop)::26 of 287
Pseudo Genes (multiple problems)::23 of 287
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,987,256
Total ungapped length6,987,256
Number of contigs272
Contig N5078,065
Contig L5029
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)272

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,987,2562726,987,25678,06500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycolicibacterium agriMycolicibacterium agri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010722915.1Mycolicibacterium agritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010722915.1Mycolicibacterium agritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.4295.20
Best-match type99.9999.4295.20

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna