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ASM243412v1

Organism name:
Massilia timonae (b-proteobacteria)
Taxonomy check:
OK
Isolate:
UBA6570
BioSample:
SAMN06454958
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/10/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_002434125.1 (latest)
RefSeq assembly accession:
GCF_002434125.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
DJJK01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
11.5x
Sequencing technology:
Illumina

IDs: 1266141 [UID] 5176818 [GenBank] 40760668 [RefSeq]

See Genome Information for Massilia timonae

There are 16 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,559,161
Total ungapped length4,554,174
Gaps between scaffolds0
Number of scaffolds422
Scaffold N5015,940
Scaffold L5090
Number of contigs478
Contig N5015,806
Contig L5092
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)422

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,559,1614224,554,17415,940560

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Massilia timonaeMassilia timonae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000315425.1Massilia timonae CCUG 45783type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000315425.1Massilia timonaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4693.0670.18
Best-match type98.4693.0670.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna