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ASM230585v1

Organism name:
Melittangium boletus DSM 14713 (bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Culture-collection: DSM:14713
Infraspecific name:
Strain: DSM 14713
BioSample:
SAMN06850203
BioProject:
PRJNA189498
Submitter:
Max Planck Institute for Terrestrial Microbiology
Date:
2017/09/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002305855.1 (latest)
RefSeq assembly accession:
GCF_002305855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 8.1
Expected final version:
yes
Genome coverage:
83.0x
Sequencing technology:
PacBio

IDs: 1199471 [UID] 5017208 [GenBank] 5022368 [RefSeq]

See Genome Information for Melittangium boletus

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002305855.1-RS_2024_05_03
Annotation Date::05/03/2024 03:12:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,200
CDSs (total)::8,124
Genes (coding)::8,050
CDSs (with protein)::8,050
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::74
CDSs (without protein)::74
Pseudo Genes (ambiguous residues)::0 of 74
Pseudo Genes (frameshifted)::13 of 74
Pseudo Genes (incomplete)::65 of 74
Pseudo Genes (internal stop)::5 of 74
Pseudo Genes (multiple problems)::7 of 74
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,910,441
Total ungapped length9,910,441
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002305865.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP022163.1=NZ_CP022163.1

Assembly statistics

MoleculeTotal
Length
Chromosome 9,910,441

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Melittangium boletus DSM 14713Melittangium boletus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000335475.2Cystobacter fuscustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.2653.0442.79

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna