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ASM210184v1

Organism name:
Mycobacterium riyadhense (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:45176
Infraspecific name:
Strain: DSM 45176
BioSample:
SAMN04216947
BioProject:
PRJNA299467
Submitter:
University of Trento
Date:
2017/04/20
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002101845.1 (latest)
RefSeq assembly accession:
GCF_002101845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LQPQ01
Assembly method:
Spades v. 3.5.0
Expected final version:
yes
Genome coverage:
103x
Sequencing technology:
Illumina HiSeq

IDs: 1076261 [UID] 4388948 [GenBank] 4404758 [RefSeq]

See Genome Information for Mycobacterium riyadhense

There are 12 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/11/2016 14:06:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,582
CDS (total)::5,530
Genes (coding)::5,168
CDS (coding)::5,168
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::362
Pseudo Genes (ambiguous residues)::0 of 362
Pseudo Genes (frameshifted)::75 of 362
Pseudo Genes (incomplete)::296 of 362
Pseudo Genes (internal stop)::24 of 362
Pseudo Genes (multiple problems)::29 of 362
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,269,850
Total ungapped length6,269,850
Number of contigs263
Contig N5056,910
Contig L5032
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)263

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,269,8502636,269,85056,91000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium riyadhenseMycobacterium riyadhense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025821735.1Mycobacterium riyadhensetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025821735.1Mycobacterium riyadhensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9499.6297.26
Best-match type99.9499.6297.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna