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Source database (GenBank or RefSeq) File type

ASM209681v1

Organism name:: Streptococcus mitis (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: RH_12363_08
BioSample:: SAMN06705599
BioProject:: PRJNA304678
Submitter:: Slagelse Hospital
Date:: 2017/04/18
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_002096815.1 (latest)
RefSeq assembly accession:: GCF_002096815.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: NCVJ01
Assembly method:: SPAdes v. 3.1.1
Expected final version:: yes
Genome coverage:: 5.73x
Sequencing technology:: Illumina HiSeq

IDs: 1073591 [UID] 4383828 [GenBank] 4391088 [RefSeq]

See Genome Information for Streptococcus mitis

Pathogen Detection Resources

There are 794 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002096815.1	=	GCF_002096815.1	ASM209681v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria available from Xiaohui Chen Nielsen, Department of Clinical Microbiology, Slagelse Hospital, Denmark.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::04/13/2017 11:51:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,997
CDS (total)::1,939
Genes (coding)::1,860
CDS (coding)::1,860
Genes (RNA)::58
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (5S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::79
Pseudo Genes (ambiguous residues)::2 of 79
Pseudo Genes (frameshifted)::43 of 79
Pseudo Genes (incomplete)::27 of 79
Pseudo Genes (internal stop)::26 of 79
Pseudo Genes (multiple problems)::17 of 79
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,984,277
Total ungapped length	1,983,811
Gaps between scaffolds	0
Number of scaffolds	21
Scaffold N50	263,920
Scaffold L50	3
Number of contigs	25
Contig N50	215,980
Contig L50	3
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	21

	ANI	Query coverage	Subject coverage
Declared type	94.12	75.51	81.01
Best-match type	94.12	75.51	81.01

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ASM209681v1

See Genome Information for Streptococcus mitis

Pathogen Detection Resources

There are 794 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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