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ofav_dov_v1

Organism name:
Orbicella faveolata (stony corals)
Isolate:
FL
Sex:
hermaphrodite
BioSample:
SAMN06562666
BioProject:
PRJNA378841
Submitter:
Smithsonian Tropical Research Institute
Date:
2017/03/20
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002042975.1 (latest)
RefSeq assembly accession:
GCF_002042975.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
MZGG01
Assembly method:
ABySS v. Jun 2014
Expected final version:
yes
Genome coverage:
251.0x
Sequencing technology:
Illumina HiSeq; Illumina MiSeq

IDs: 1039351 [UID] 4255088 [GenBank] 4326108 [RefSeq]

See Genome Information for Orbicella faveolata

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length485,548,939
Total ungapped length356,014,643
Gaps between scaffolds0
Number of scaffolds1,933
Scaffold N501,162,446
Scaffold L50124
Number of contigs55,729
Contig N5012,468
Contig L507,434
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1,933

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced485,532,8011,932355,998,5051,162,44653,7960
MoleculeTotal
Length
Mitochondrion MT16,138