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ASM196898v1

Organism name:
Desulfurobacterium indicum (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: K6013
BioSample:
SAMN05954263
BioProject:
PRJNA351764
Submitter:
The Third Institute of State Oceanic Administration
Date:
2017/01/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001968985.1 (latest)
RefSeq assembly accession:
GCF_001968985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MOEN01
Assembly method:
SPAdes v. 3.8.1
Expected final version:
no
Genome coverage:
749.0x
Sequencing technology:
Illumina HiSeq

IDs: 961641 [UID] 4010978 [GenBank] 4057688 [RefSeq]

See Genome Information for Desulfurobacterium indicum

History (Show revision history)

Comment

Bacteria and source DNA available from Marine Culture Collection of China.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/01/2016 08:35:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,722
CDS (total)::1,672
Genes (coding)::1,617
CDS (coding)::1,617
Genes (RNA)::50
rRNAs::2, 1, 3 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::41
ncRNAs::3
Pseudo Genes (total)::55
Pseudo Genes (ambiguous residues)::0 of 55
Pseudo Genes (frameshifted)::3 of 55
Pseudo Genes (incomplete)::49 of 55
Pseudo Genes (internal stop)::3 of 55
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,607,407
Total ungapped length1,607,407
Number of contigs62
Contig N5046,129
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)62

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,607,407621,607,40746,12900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfurobacterium indicumDesulfurobacterium indicum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004339575.1Phorcysia thermohydrogeniphilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.230.670.66

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected