U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM195414v1

Organism name:
Mycolicibacterium fortuitum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: GA-0871
BioSample:
SAMN04634280
BioProject:
PRJNA305922
Submitter:
JCVI
Date:
2017/01/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001954145.1 (latest)
RefSeq assembly accession:
GCF_001954145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MBER01
Assembly method:
SPAdes v. 3.1.1
Expected final version:
no
Genome coverage:
44.2x
Sequencing technology:
Illumina NextSeq 500

IDs: 953271 [UID] 3987728 [GenBank] 4007538 [RefSeq]

See Genome Information for Mycolicibacterium fortuitum

There are 61 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/14/2016 14:39:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,463
CDS (total)::6,401
Genes (coding)::6,229
CDS (coding)::6,229
Genes (RNA)::62
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::56
ncRNAs::3
Pseudo Genes (total)::172
Pseudo Genes (ambiguous residues)::0 of 172
Pseudo Genes (frameshifted)::23 of 172
Pseudo Genes (incomplete)::139 of 172
Pseudo Genes (internal stop)::13 of 172
Pseudo Genes (multiple problems)::3 of 172
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,642,199
Total ungapped length6,642,199
Number of contigs190
Contig N5077,699
Contig L5029
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)190

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,642,1991906,642,19977,69900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycolicibacterium fortuitumMycolicibacterium fortuitum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001570465.1Mycolicibacterium fortuitum subsp. acetamidolyticumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001570465.1Mycolicibacterium fortuitumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.5785.6980.15
Best-match type96.5785.6980.15

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna