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Source database (GenBank or RefSeq) File type

ASM172976v1

Organism name:: Enterobacter kobei (enterobacteria)
Taxonomy check:: Inconclusive
Infraspecific name:: Strain: DSM 13645
BioSample:: SAMN05581747
BioProject:: PRJNA259658
Submitter:: JCVI
Date:: 2016/09/16
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_001729765.1 (latest)
RefSeq assembly accession:: GCF_001729765.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP v. 3.0.0
Expected final version:: yes
Genome coverage:: 11.97x
Sequencing technology:: PacBio

IDs: 796101 [UID] 3449138 [GenBank] 3456378 [RefSeq]

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001729765.1	=	GCF_001729765.1	ASM172976v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2024 13:31:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,801
CDSs (total)::4,683
Genes (coding)::4,526
CDSs (with protein)::4,526
Genes (RNA)::118
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::87
ncRNAs::6
Pseudo Genes (total)::157
CDSs (without protein)::157
Pseudo Genes (ambiguous residues)::0 of 157
Pseudo Genes (frameshifted)::56 of 157
Pseudo Genes (incomplete)::100 of 157
Pseudo Genes (internal stop)::27 of 157
Pseudo Genes (multiple problems)::22 of 157
Pseudo Genes (short protein)::1 of 157
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,927,478
Total ungapped length	4,927,478
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP017181.1	=	NZ_CP017181.1
Plasmid pDSMZ13645	CP017182.1	=	NZ_CP017182.1

Molecule	Total Length
All	4,927,478
Chromosome	4,880,257
Plasmid pDSMZ13645	47,221

	ANI	Query coverage	Subject coverage
Declared type	82.85	37.14	38.63
Best-match type	91.38	80.05	83.78

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ASM172976v1

See Genome Information for Enterobacter kobei

Pathogen Detection Resources

There are 619 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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