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ASM168495v1

Organism name:
Chryseobacterium contaminans (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: C-26
BioSample:
SAMN05366335
BioProject:
PRJNA328194
Submitter:
Korea University
Date:
2016/07/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001684955.1 (latest)
RefSeq assembly accession:
GCF_001684955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MAYF01
Assembly method:
SPAdes v. 3.6.1
Expected final version:
yes
Genome coverage:
281.2x
Sequencing technology:
Illumina MiSeq

IDs: 769041 [UID] 3342638 [GenBank] 3394638 [RefSeq]

See Genome Information for Chryseobacterium contaminans

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/11/2016 11:10:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,355
CDS (total)::4,265
Genes (coding)::4,000
CDS (coding)::4,000
Genes (RNA)::90
rRNAs::4, 3, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3, 2 (5S, 16S)
tRNAs::79
ncRNAs::3
Pseudo Genes (total)::265
Pseudo Genes (ambiguous residues)::0 of 265
Pseudo Genes (frameshifted)::14 of 265
Pseudo Genes (incomplete)::244 of 265
Pseudo Genes (internal stop)::10 of 265
Pseudo Genes (multiple problems)::3 of 265
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,704,265
Total ungapped length4,704,265
Number of contigs366
Contig N5025,005
Contig L5044
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)366

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,704,2653664,704,26525,00500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Chryseobacterium contaminansChryseobacterium contaminans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900142615.1Chryseobacterium contaminanstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900142615.1Chryseobacterium contaminanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.1599.52
Best-match type99.9999.1599.52

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna