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Source database (GenBank or RefSeq) File type

M.esculenta_v8

Organism name:

Manihot esculenta (cassava)

Infraspecific name:

Cultivar: AM560-2

BioSample:

SAMN04116956

BioProject:

PRJNA234389

Submitter:

DOE-Joint Genome Institute

Date:

2021/08/13

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_001659605.2 (latest)

RefSeq assembly accession:

GCF_001659605.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

LTYI02

Assembly method:

Canu v. 1.6

Genome coverage:

97x

Sequencing technology:

PacBio RSII; Sequel

IDs: 10695271 [UID] 28345458 [GenBank] 28933868 [RefSeq]

See Genome Information for Manihot esculenta

Pathogen Detection Resources

There are 12 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001659605.2	≠	GCF_001659605.2	M.esculenta_v8	Chromosome	Latest GenBank, Latest RefSeq
GCA_001659605.1	≠	GCF_001659605.1	Manihot esculenta v6	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	640,430,993
Total ungapped length	637,958,648
Gaps between scaffolds	18
Number of scaffolds	104
Scaffold N50	29,151,420
Scaffold L50	10
Number of contigs	758
Contig N50	3,258,867
Contig L50	56
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	758

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM004387.2	=	NC_035161.2	0
Chromosome 2	CM004388.2	=	NC_035162.2	0
Chromosome 3	CM004389.2	=	NC_035163.2	0
Chromosome 4	CM004390.2	=	NC_035164.2	0
Chromosome 5	CM004391.2	=	NC_035165.2	0
Chromosome 6	CM004392.2	=	NC_035166.2	0
Chromosome 7	CM004393.2	=	NC_035167.2	0
Chromosome 8	CM004394.2	=	NC_035168.2	0
Chromosome 9	CM004395.2	=	NC_035169.2	0
Chromosome 10	CM004396.2	=	NC_035170.2	0
Chromosome 11	CM004397.2	=	NC_035171.2	0
Chromosome 12	CM004398.2	=	NC_035172.2	0
Chromosome 13	CM004399.2	=	NC_035173.2	0
Chromosome 14	CM004400.2	=	NC_035174.2	0
Chromosome 15	CM004401.2	=	NC_035175.2	0
Chromosome 16	CM004402.2	=	NC_035176.2	0
Chromosome 17	CM004403.2	=	NC_035177.2	0
Chromosome 18	CM004404.2	=	NC_035178.2	0
unplaced	n/a	n/a	n/a	66

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	MK176513.1	=	NC_045136.1
Chloroplast Pltd	EU117376.1	=	NC_010433.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	639,586,700	102	637,114,355	29,151,420	654	18
Chromosome 1	42,998,274	2	42,853,749	41,691,135	35	1
Chromosome 2	38,567,855	1	38,481,762	38,567,855	21	0
Chromosome 3	33,309,257	5	33,011,654	17,905,080	45	4
Chromosome 4	35,938,211	2	35,775,386	29,151,420	38	1
Chromosome 5	33,681,570	2	33,608,170	28,522,150	14	1
Chromosome 6	30,819,343	1	30,740,845	30,819,343	15	0
Chromosome 7	34,668,054	2	34,549,856	18,892,609	22	1
Chromosome 8	41,806,886	2	41,629,371	25,120,443	35	1
Chromosome 9	37,838,006	2	37,685,686	37,741,745	38	1
Chromosome 10	32,070,051	4	31,999,326	14,036,566	17	3
Chromosome 11	33,098,381	1	32,948,260	33,098,381	31	0
Chromosome 12	37,136,911	1	37,006,966	37,136,911	29	0
Chromosome 13	36,952,686	2	36,778,490	25,409,979	42	1
Chromosome 14	29,308,386	1	29,213,589	29,308,386	18	0
Chromosome 15	32,923,186	2	32,864,267	21,366,306	17	1
Chromosome 16	34,171,075	2	34,131,950	26,295,950	11	1
Chromosome 17	35,156,893	2	35,026,101	34,737,383	27	1
Chromosome 18	33,477,107	2	33,300,832	33,459,735	42	1
unplaced	5,664,568	66	5,508,095	1,034,286	157	0

Molecule	Total Length
All	844,293
Mitochondrion MT	682,840
Chloroplast Pltd	161,453

Assembly

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M.esculenta_v8

See Genome Information for Manihot esculenta

Pathogen Detection Resources

There are 12 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear