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ASM144040v1

Organism name:
Bradyrhizobium valentinum (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LmjM3
BioSample:
SAMN02688507
BioProject:
PRJNA241154
Submitter:
UPM
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001440405.1 (latest)
RefSeq assembly accession:
GCF_001440405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LLXX01
Assembly method:
Velvet v. 1.1
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 581661 [UID] 2587908 [GenBank] 2682678 [RefSeq]

See Genome Information for Bradyrhizobium valentinum

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from CECT 8364.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/23/2015 16:36:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,393
CDS::7,770
Pseudo Genes::569
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::50
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,845,258
Total ungapped length8,825,946
Gaps between scaffolds0
Number of scaffolds242
Scaffold N5072,962
Scaffold L5036
Number of contigs430
Contig N5041,989
Contig L5064
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)242

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,845,2582428,825,94672,9621880

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bradyrhizobium valentinumBradyrhizobium valentinum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001440415.1Bradyrhizobium retamaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.5063.6466.34

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected