U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM143427v1

Organism name:
Companilactobacillus mindensis DSM 14500 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:14500
Infraspecific name:
Strain: DSM 14500
BioSample:
SAMN02369489
BioProject:
PRJNA222257
Submitter:
Shanghai Majorbio
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001434275.1 (latest)
RefSeq assembly accession:
GCF_001434275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZEZ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 578611 [UID] 2581718 [GenBank] 2682958 [RefSeq]

See Genome Information for Companilactobacillus mindensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,336,411
Total ungapped length2,335,230
Gaps between scaffolds0
Number of scaffolds103
Scaffold N5052,475
Scaffold L5014
Number of contigs129
Contig N5039,343
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)103

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,336,4111032,335,23052,475260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Companilactobacillus mindensis DSM 14500Companilactobacillus mindensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007992055.1Companilactobacillus mindensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007992055.1Companilactobacillus mindensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9997.8599.99
Best-match type99.9997.8599.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna