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ASM127375v1

Organism name:
Peribacillus butanolivorans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:18926
Infraspecific name:
Strain: DSM 18926
BioSample:
SAMN03940003
BioProject:
PRJNA291104
Submitter:
Fujian Academy of Agricultural Sciences
Date:
2015/08/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001273755.1 (latest)
RefSeq assembly accession:
GCF_001273755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LGYA01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina HiSeq

IDs: 475921 [UID] 2298438 [GenBank] 2299168 [RefSeq]

See Genome Information for Peribacillus butanolivorans

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/30/2015 12:52:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,275
CDS::4,893
Pseudo Genes::282
rRNAs::7 (5S, 16S, 23S)
tRNAs::92
ncRNA::1
Frameshifted Genes::132
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,682,344
Total ungapped length5,618,280
Gaps between scaffolds0
Number of scaffolds17
Scaffold N504,601,026
Scaffold L501
Number of contigs79
Contig N50166,745
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)17

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,682,344175,618,2804,601,026620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Peribacillus butanolivoransPeribacillus butanolivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002243645.1Peribacillus simplexsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.9857.2456.96

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected