U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



8016_2#91

Organism name:
Yersinia nurmii (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Serovar: not known
Infraspecific name:
Strain: CIP110231T
BioSample:
SAMEA1486436
BioProject:
PRJEB2879
Submitter:
SC
Date:
2015/07/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001112925.1 (latest)
RefSeq assembly accession:
GCF_001112925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CPYD01
Genome coverage:
100x

IDs: 393711 [UID] 1929998 [GenBank] 2027438 [RefSeq]

See Genome Information for Yersinia nurmii

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,143,134
Total ungapped length4,143,099
Gaps between scaffolds0
Number of scaffolds45
Scaffold N50324,145
Scaffold L505
Number of contigs46
Contig N50324,145
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,143,134454,143,099324,14510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia nurmiiYersinia nurmii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001656035.1Yersinia entomophagatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.8094.0491.15

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna