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Streptococcus sanguinis 2908

Organism name:
Streptococcus sanguinis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 2908
BioSample:
SAMEA3207422
BioProject:
PRJEB7884
Submitter:
IMPERIAL COLLEGE LONDON
Date:
2015/07/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001078705.1 (latest)
RefSeq assembly accession:
GCF_001078705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CDMW01
Genome coverage:
100x

IDs: 376591 [UID] 1895758 [GenBank] 3787278 [RefSeq]

See Genome Information for Streptococcus sanguinis

Pathogen Detection Resources

There are 147 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,308,610
Total ungapped length2,308,545
Gaps between scaffolds0
Number of scaffolds1
Scaffold N502,308,610
Scaffold L501
Number of contigs2
Contig N501,618,102
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,308,61012,308,5452,308,61010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sanguinisStreptococcus sanguinis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475505.1Streptococcus sanguinistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475505.1Streptococcus sanguinistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.3187.9088.35
Best-match type94.3187.9088.35

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna