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ASM102813v1

Organism name:
Xenorhabdus griffiniae (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: BMMCB
BioSample:
SAMN03611398
BioProject:
PRJNA283267
Submitter:
University of the Witwatersrand
Date:
2015/06/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001028135.1 (latest)
RefSeq assembly accession:
GCF_001028135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LDNM01
Assembly method:
CLC NGS Cell v. MAY-2015
Expected final version:
yes
Genome coverage:
232.0x
Sequencing technology:
Illumina MiSeq

IDs: 350171 [UID] 1807918 [GenBank] 1818598 [RefSeq]

See Genome Information for Xenorhabdus griffiniae

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/27/2015 12:18:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,970
CDS::3,614
Pseudo Genes::271
CRISPR Arrays::1
rRNAs::12 (5S, 16S, 23S)
tRNAs::70
ncRNA::3
Frameshifted Genes::77
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,183,760
Total ungapped length4,183,408
Gaps between scaffolds0
Number of scaffolds231
Scaffold N5057,901
Scaffold L5021
Number of contigs233
Contig N5057,901
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)231

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,183,7602314,183,40857,90120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xenorhabdus griffiniaeXenorhabdus griffiniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_037265215.1Xenorhabdus griffiniaesuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002632445.1Xenorhabdus ehlersiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.7270.0361.44
Best-match type92.2469.3467.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna