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Source database (GenBank or RefSeq) File type

ASM102515v1

Organism name:: Bifidobacterium angulatum DSM 20098 = JCM 7096 (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: JCM 7096
BioSample:: SAMD00061039
BioProject:: PRJDB55
Submitter:: Graduate School of Frontier Sciences, University of Tokyo
Date:: 2015/03/24
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_001025155.1 (latest)
RefSeq assembly accession:: GCF_001025155.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: phrap v 0.990329; Newbler v 1.1.02.15
Genome coverage:: 15.8x
Sequencing technology:: 3730xl; 454FLX

IDs: 348761 [UID] 1804668 [GenBank] 1818358 [RefSeq]

See Genome Information for Bifidobacterium angulatum

Pathogen Detection Resources

There are 25 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001025155.1	=	GCF_001025155.1	ASM102515v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/07/2024 01:06:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,630
CDSs (total)::1,562
Genes (coding)::1,535
CDSs (with protein)::1,535
Genes (RNA)::68
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::27
CDSs (without protein)::27
Pseudo Genes (ambiguous residues)::0 of 27
Pseudo Genes (frameshifted)::8 of 27
Pseudo Genes (incomplete)::20 of 27
Pseudo Genes (internal stop)::4 of 27
Pseudo Genes (multiple problems)::4 of 27
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,021,974
Total ungapped length	2,021,974
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.90	99.13	99.86
Best-match type	99.90	99.13	99.86

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ASM102515v1

See Genome Information for Bifidobacterium angulatum

Pathogen Detection Resources

There are 25 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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