Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Para_gold_DSM_19448_V1

Organism name:: Parabacteroides goldsteinii DSM 19448 = WAL 12034 (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Culture-collection: DSM:19448
Infraspecific name:: Strain: DSM 19448
BioSample:: SAMN03383454
BioProject:: PRJNA170353
Submitter:: Broad Institute
Date:: 2015/04/07
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000969835.1 (latest)
RefSeq assembly accession:: GCF_000969835.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AQHV01
Assembly method:: ALLPATHS v. R42768
Genome coverage:: 275.0x
Sequencing technology:: Illumina

IDs: 320981 [UID] 1723528 [GenBank] 1725058 [RefSeq]

See Genome Information for Parabacteroides goldsteinii

Pathogen Detection Resources

There are 258 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000969835.1	=	GCF_000969835.1	Para_gold_DSM_19448_V1	Scaffold	Latest GenBank, Latest RefSeq

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Eric Martens. (University of Michigan Medical School, USA). 
Bacteria provided by Eric Martens. (University of Michigan ... Medical School, USA).
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length	6,486,757
Total ungapped length	6,453,122
Gaps between scaffolds	0
Number of scaffolds	7
Scaffold N50	3,531,919
Scaffold L50	1
Number of contigs	33
Contig N50	511,428
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	33

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	95.75	76.20	67.30

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

Para_gold_DSM_19448_V1

See Genome Information for Parabacteroides goldsteinii

Pathogen Detection Resources

There are 258 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result