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Source database (GenBank or RefSeq) File type

LFA

Organism name:: Legionella fallonii LLAP-10 (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: LLAP-10
BioSample:: SAMEA2785663
BioProject:: PRJEB7322
Submitter:: INSTITUT PASTEUR
Date:: 2014/10/21
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000953135.1 (latest)
RefSeq assembly accession:: GCF_000953135.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 20x

IDs: 311781 [UID] 1684218 [GenBank] 1689668 [RefSeq]

See Genome Information for Legionella fallonii

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000953135.1	=	GCF_000953135.1	LFA	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/12/2024 01:17:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,761
CDSs (total)::3,700
Genes (coding)::3,656
CDSs (with protein)::3,656
Genes (RNA)::61
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::11 of 44
Pseudo Genes (incomplete)::38 of 44
Pseudo Genes (internal stop)::4 of 44
Pseudo Genes (multiple problems)::8 of 44
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,434,890
Total ungapped length	4,434,890
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome I	LN614827.1	=	NZ_LN614827.1
Plasmid II	LN614828.1	=	NZ_LN614828.1
Plasmid III	LN614829.1	=	NZ_LN614829.1

Molecule	Total Length
All	4,434,890
Chromosome I	4,181,563
Plasmid II	238,761
Plasmid III	14,566

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	83.66	14.18	15.85

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LFA

See Genome Information for Legionella fallonii

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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